I really like what Eric said and it has a lot of technical merit. The knock sensor is similar to a "glass brake" sensor on a home security system. If something else makes a sound that closely simulates the sound of glass braking, it will set off the glass brake detector, setting off the alarm. One way to minimize that is by not having the glass brake detector too sensitive and locating it very close to the window. That way even if something else simulated the sound, it would have to be very close to the window to set it off.
The same principle applies with the knock sensor. You don't want it too sensitive and you want it close to the source. That's probably why we have 2, 1 for each bank. Anyway, if the supercharger is creating the same noise at some point as the knock sensor is listening for, maybe it is tripping it. It is located pretty close which would explain why the rear is a problem.
In this case taking the front and running into both ECU knock sensor inputs should work well. As long as all components are working and fuel delivery is even, monitoring the front bank should be sufficient. I'm not even having a problem with this and I'm going to do it. I think that for whatever reason, some superchargers might more closely simulate the frequency or noise pattern that the knock sensor is listening for. That would explain why some people have much more trouble than others. I've been running 6psi for quite some time and now 7psi and haven't had any trouble. And trust me, I don't baby it

. I NEVER take off from a light worrying if my CEL will come on. And for my disclaimer, I'm not a mechanic, it just sounds right to me... -JoeB